What's Changed
- Fix --check_frequency to treat an allele frequency of exactly 0 as non-null by @likhitha-surapaneni in #2052
- adding ncRNA_gene to accepted transcript biotypes for GFF by @jamie-m-a in #2053
- Fix --freq_filter dropping rare insertions via colliding allele names (#1404) by @davmlaw in #2047
- Keep custom annotations on 3' shifted alleles by @davmlaw in #2038
- Update README to remove known bug by @ainefairbrother in #2059
- Fix tests post PR-2047 by @likhitha-surapaneni in #2058
Full Changelog: release/116.2...release/116.3