Ensembl/ensembl-vep release/113.0

on GitHub

New in version 113 (October 2024)

• gnomAD frequency data updated to v4.1 for both genomes and exomes.
• Support for GENCODE primary transcript set added. See, --gencode_primary and
  --flag_gencode_primary.
• Support added for --mane, --mane_select, and --canonical when GFF/GTF file used as annotation source.
• Nextflow VEP now suppots other input data formats besides VCF. For supported formats see - Data formats.

Plugin support added to REST and Web for:

• RiboseqORFs
• REVEL
• ClinPred

Plugin support added to Web for:

• Paralogues

Plugin support added to REST for:

• LOEUF

• Plugin data version updated for CADD (v1.6 to v1.7) and dbNSFP (4.5c to 4.7c).