FastSurfer v2.4.1
This hot fix release contains several fixes (the default pipeline is not affected):
--allow_rootwas broken in run_fastsurfer and long_fastsurfer and now is fixed.- the new longitudinal stream stopped when image geometries were not perfectly identical across time points (this usually indicates changes in the image acquisition or the pre-processing and can be a source of bias - i.e. measuring changes when there are none). It now gives a warning as intended and then continues. Please take the warning seriously and check why your image resolutions differ across time, even if the difference is small.
- adding a T2 for the hippothalamus segmentation did not work correctly and is fixed now. Also note, that we perform a registration to the T1 and for that currently you need to pass a freesurfer licenses even in the segmentation block (only when passing a T2 in addition to a T1).
- Further fixes in srun_fastsurfer and brun_fastsurfer.
What's Changed
- Fix allow_root in run_fastsurfer and long_fastsurfer by @dkuegler in #658
- run diff command in if statement to catch error by @m-reuter in #657
- Fixes additional flags in srun_fastsurfer and T2 processing by @dkuegler in #656
Full Changelog: v2.4.0...v2.4.1