What's Changed
- Conform now handles 4-dimensional data frames correctly, if the fourth dim is size 1
- Update Tutorial README with pip dependency comments
- Add requirements.in, and pip-compiled requirements.txt
- Add issue templates (bug, feature, docs, support)
- recon_surf Time Extraction
- Generate balabels if possible
- Saving FastSurferCNN output in mgz, nii, or nii.gz
- Saving conformed input in FastSurferCNN to use in recon-surf (solves larger field of view)
- FIX: guide sphere reg with FastSurferCNN precentral
- Added check for adjusted conformed_name flag
- Switch off use of Cholmod from scikit sparse
- Fix Fastsurfer output names to show DKT
- Rename branch master to stable and use dev branch for development
Full Changelog: https://github.com/Deep-MI/FastSurfer/commits/v1.0.0
Note: We are currently generating tested releases for FastSurfer. This is our first official release and includes many updates compared to the earlier unstable versions. However, this is also the last release that uses FastSurfer v6.0 for recon-surf. Our roadmap is to follow shortly with these releases, so stay tuned:
- v.1.1.0 to upgrade to FreeSurfer 7.2, Ubuntu 20.04, faster N4 BiasCorrect from sITK and fix for CC segmentation speed. Release: if all goes well, within a week or two.
- v.2.0.0 Permit high-res processing by switching to FastSurferVINN and upgrading recon-surf to hires. Release: if all goes well, within a month