github broadinstitute/picard 2.8.2
on GitHub

Minor update with bug fixes:

  • Use mapped file dictionary in MergeBamAlignment (#739)
  • Update tests to remove temporary data upon completion.
  • Revert “Fix sorting of lifted intervals in LiftOverIntervalList (#726) (#682)” (#737)
  • Fix case error in usage example of SamToFastq
  • Fix sorting of lifted intervals in LiftOverIntervalList (#726) (#682)
  • Exposed options to reverse and rc attributes in MergeBamAlignment. (#731)
  • Fix sorting of lifted intervals in LiftOverIntervalList (#726)
  • Added ‘.genotype_concordance’ into the output VCF name. (#725)
  • Code cleaning (#717)
  • Small changes to how MBA works with bacterial contamination (#701)
3 years ago