github broadinstitute/picard 2.18.16
on GitHub

  • Adds DUPLEX_UMI argument to UmiAwareMarkDuplicatesWithMateCigar (#1235)
  • Fixed bug in MarkDuplicates where it was mismarking which reads were optical duplicates when TAGGING_POLICY is set. (#1244)
  • Fixed order dependance bug in graphUtils.cluster() algorithm. (#1245)
  • Protection against using the wrong sample alias which produces zero L… (#1242)
  • Use provided sequence dictionary with MergeVcfs. (#1234)
  • As dsdegp 2574 pf percent misreported (#1231)
  • Add Scatter by IntervalCount (IntervalListTools) (#1208)
  • fixing mistake in documentation of RevertSam (#1232)
  • Revert “Changed the OpticalDuplicateFinding code to rely on a proper clustering algorithm”
  • Changed the OpticalDuplicateFinding code to rely on a proper clustering algorithm
  • Made OpticalDuplicateFinder Serializable (#1230)
20 months ago