github broadinstitute/picard 2.18.13
on GitHub

  • upgrade to htsjdk 2.16.1 (#1224)
  • now starting from the origin commit
  • Fix output file naming
  • Fix to ValidateSamFile to warn when NM validation occurs without reference (#258) (#1220)
  • improves MarkDuplcates documentation, fixes #1087 (#1088)
  • Installation of r-base in Docker Image allows RExecutor to work (#1198)
  • Warning message about upcoming command line syntax transition. (#1204)
  • CreateSequenceDictionary support for alternative names (@SQ-AN) (#1127)
  • Fix GenotypeConcordance bug writing spanning deletion (#1210)
  • The method createTemporaryIndexedVcfFromInput(File, String) was changed (#1213)
22 months ago