github broadinstitute/picard 2.10.7
on GitHub

Bug fixes

  • The documentation for ScatterIntervalsByNs did not mention that its REFERENCE argument must have both an index and a dictionary, and the tool would raise a NullPointerException if either of these requirements were missing. Now the documentation lists the requirement, and the tool raises more informative errors when either index or dictionary are not present (#881).

  • The Intel Deflater and Inflater would fail to load, and sometimes cause Picard to hang, on CentOS. Now the Intel tools work on CentOS (#888).

  • Upon initialization, the Intel Deflater and Inflater would log an ERROR message about missing configuration. Now the log is not produced (#891).

    For developers

  • New test CommandLineProgramStartupErrorLogTest ensures that default startup logic common to all Picard CLPs does not produce an ERROR log (#894).

2 years ago