github broadinstitute/picard 2.10.6
on GitHub

Bug fixes

  • We now recommend setting RevertSam’s VALIDATION_STRINGENCY to LENIENT or SILENT if SAM records do not validate and the reversion will obviate the failures (#858).
  • Fingerprinting tools introduced a bug where if platform unit (PU) was undefined, the tool would error. Now the tools allow for an empty PU attribute (#885).
  • DownsampleSam’s METRICS_FILE argument is now optional instead of required (#884).

For developers

  • Instead of using idiosyncratic ordering, IlluminaDataProviderFactory’s availableTiles now sorts CBCL tiles for predictable handling, e.g. when parallelizing processes (#878).
2 years ago